Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015794946.1_cds_XP_016441660.1_3617
CDS Infomation

[gene=LOC107767246] [db_xref=GeneID:107767246] [protein=coiled-coil domain-containing protein 18-like isoform X2] [protein_id=XP_016441660.1] [location=complement(join(8661..9039,9132..9202,10435..10516,10596..10663,10750..10816,10946..11076,11217..11324,12293..12358,12513..12561,13356..13432,14382..14492,15456..15570,16233..16306,17420..17516,17649..17701,18360..18455,20485..20727))] [gbkey=CDS]
Sequence

ATGATTTACTGTTTATGCCAGGGGAATAGGAACTTCAAAAGCTTCAAACAGACGGTCAAA
AGATTGGAAGAAGCTTCTGTTTCTTGCAGGGGACCAGAGAGAGTTCGATTGCTGAAAATG
TGGTTAGCTGTACTTAAAGAAATTGAAAAGAGGACTGAGATTTCTGCTGAAGATAAGGAT
AAGATCAAAGAGCAGCAGTATCCCTCTGAAGAAGCAAAGGAGAATCCAAGAAAACAATCG
CTGGTTCTCTATTATGATTCTGAGATGGGTGGTGAACCAATGAACTTCCGTGACGTCTTT
CTGTACAGTCAAGCTTTGGAGGGCATATCAATATGTATGATTCTTGAAGCGCCAAATGAA
GAAGAAGTCGATCTCCTCCTTGAATTGTTTGGACTGTGTCTTACCGGAGGAAAAGCGGTT
CACTATGCAATAGTCAGCAGTATCCAGGATCTGGCAAAAGCTTTCTCAAGCTACCAAGAT
GAAGTATTGGTAAAGCGAGATGAGCTGCTCCAGTTTGCAGAAAGTGCTATCACAGGTTTG
AAAATTAATGCTGATCTTGGGAGAATTGATGCTGAGCTCTCATTGTTGAAGAAAAAACTT
GATGAAATAAAAGCAGCAAAGGGCCCAAATGGTGAGGGTCATGAATTGATGCCCCAAGAG
ACTGCTGCCTCAATAGAGGCTCTGAAAGAAGCACTTGCACATATTCGGGTCTGCTCTAAA
TTAGAAGGGCTTCTACTGAAGAAAAAAGCTCTTAAATATGGGGACTCCCCTGAAGTCCAT
GTTCAGAAGGTTGATAAGTTGAAAGTCTTATCTGAATCTCTTGCTAGCTCCACCTGCAAA
GCTGAAAAGAAGATATCCGACCACAGAATTCAGAAAGAGGAGGCACTAAAATTTCGTGTG
ACCAAGACTAGCGAGGAATTAGCGACAGAGGTTTCTGCACTGGAGAAACAAAGAGATGAG
ATTGAAGCTCAGTTGAAACAGGTTAATATCTCATTGGCTGCGGCTAATGCACGCCTTCAA
AATGTCCGAGAAGAGAGGGACCAGTTCTATGAAGCTAATGATCAGATTGTTGCTCATTTA
AAAACTAGGGAAGACGAGCTGACAAAATCCATTGGCTCATGTAAAGTTGAAGCAAATATC
CTTGGTACATGGATTAATTTTTTGGAAGATACTTGGACCCTTCAGTCTTCATTTACAGAG
AGTAAAGACAAGGAGGTCAGTGTTGAACTCGAAAAGCATGAGGATTATTTTGTAAACTTG
GTGATGCAACTCCTCTCTGCTTATGAGAAAGAGTTGAGGCCTTCTATTGATCGTATTTCT
AAATTTGTTGAGAACTTGCAGACTTTAGGTGAAGGTGCAGCTGTGGGATCTGGTGTCTCA
AAATCATTGAGCCCTAGGAAAAGTCTGGAGGAGGAATACTTGGACTATGAAGCCAAGATT
ATAACCACATTTAGTGTAGTTGACAACATGAGGGAGCAGTTCTACTCTCAACAAGAGAAA
ATCTCCAGGAAAGATGATCCAGATATGAAAAAGCTGTTTGAAAACATTGAGAAGCTAAGA
CAGGAATTTGAATCTATTGAACGACCAAATTTAGAAATGGAAATCCCTGTCCAAGAGGGA
GACGATTCTTCCCATGAAATGGTAGATGATAATATTTCACATCCTAAAAAGCAGGCCATA
AAAATTGCCGTAGCTGGGGAAAGCAAGAAAAATGAACCACCATCTGCCAAAATAGAGCAG
GCCCTGGACCCTGAAGCAGAGTTGGCAAAGTTGGAATCTGAATTTGGTAAGATTACTCGC
GATTACTCTGCAGAAGAGATAGGTGATTGGGAATTTGATGAGCTGGAGAAAGAGTTGAAA
TCTGGAGACTCAGCGACGAGCAAATAG

Peptide Sequence

PEP ID

XP_016441660.1
PEP Infomation

PREDICTED: coiled-coil domain-containing protein 18-like isoform X2 [Nicotiana tabacum]
Sequence

MIYCLCQGNRNFKSFKQTVKRLEEASVSCRGPERVRLLKMWLAVLKEIEKRTEISAEDKD
KIKEQQYPSEEAKENPRKQSLVLYYDSEMGGEPMNFRDVFLYSQALEGISICMILEAPNE
EEVDLLLELFGLCLTGGKAVHYAIVSSIQDLAKAFSSYQDEVLVKRDELLQFAESAITGL
KINADLGRIDAELSLLKKKLDEIKAAKGPNGEGHELMPQETAASIEALKEALAHIRVCSK
LEGLLLKKKALKYGDSPEVHVQKVDKLKVLSESLASSTCKAEKKISDHRIQKEEALKFRV
TKTSEELATEVSALEKQRDEIEAQLKQVNISLAAANARLQNVREERDQFYEANDQIVAHL
KTREDELTKSIGSCKVEANILGTWINFLEDTWTLQSSFTESKDKEVSVELEKHEDYFVNL
VMQLLSAYEKELRPSIDRISKFVENLQTLGEGAAVGSGVSKSLSPRKSLEEEYLDYEAKI
ITTFSVVDNMREQFYSQQEKISRKDDPDMKKLFENIEKLRQEFESIERPNLEMEIPVQEG
DDSSHEMVDDNISHPKKQAIKIAVAGESKKNEPPSAKIEQALDPEAELAKLESEFGKITR
DYSAEEIGDWEFDELEKELKSGDSATSK

Transcript Sequence

Gene sequence data has not been registered.